#JMOL SCRIPT COMMANDS HOW TO#
#JMOL SCRIPT COMMANDS DRIVERS#
#JMOL SCRIPT COMMANDS FULL#

# This should only be necessary for multi-frame pages. # should be called prior to jmolApplet() and should incorporate some sort of To select and display only the atoms of the sidechain of a specific amino acid, you want to use the select command followed by the amino acid name/number and. # allows control over the sync ID via javascript. # new Jmol.js feature: jmolGetSyncId() jmolSetSyncId(id) # sync jmolApplet2 OFF # turns sync off for an applet ON A DIFFERENT PAGE # sync > 'set echo top left echo OK' # sends OK to top left of all OTHER applets

#JMOL SCRIPT COMMANDS DRIVERS#

# sync jmolApplet1 #syncs this applet with jmolApplet1 both as drivers # sync * # synchronize all applets as drivers # (optional) a unique string of digits - brackets included This feature is important for cross-frame synchronization only. # syncId is not given, then the ID for the page containing the controlling applet # number that identifies the page containing the controlling applet. # along with an optional bracketed sync group identifier - generally a random # Applets are identified by appletId (jmolApplet0, for instance) name or a path and file name of a text file containing Jmol script commands. # other applets directly, without the intervention of JavaScript. This MATLAB function sends the RasMol script commands specified by Command. # In addition, the sync command allows ANY command to be sent to one or more Move one with the mouse, and the other moves as well. # The sync command allows two or more applets to be synchronized in # new feature: synchronization of applets using Jmol scripts: For example, from Applet A's console, type: Simply indicate the target applet as a second parameter to the script command. This operation is independent of the state of sync being ON or OFF.Īlso new in Jmol 11.6, you can use the Jmol math script() function to get information from another applet. Starting with Jmol 11.6, you can also use the script command with the APPLET option to send scripts to one or more applets.

#JMOL SCRIPT COMMANDS FULL#

In addition, you can specify the applet by its extension, 'A' or 'B', or by its full name, 'jmolAppletA' or 'jmolAppletB' in this case. Other options include '*' (all synchronized applets)Īnd '.' (only this applet, if it is synchronized). The '>' means 'all other synchronized applets'. Which would cause only the applet on the top to do the controlling, but allowed the bottom applet to be moved independently of that control.Īlso, if you open a console on one, you can give commands to the other using something like: Var s = (syncing ? 'sync * on sync * 'set syncMouse true'': 'sync * off') Our goal is to eventually provide full script support.

Var syncing = document.getElementById('drive').checked Jmol currently supports many of RasMol/Chime scripting commands. The video-script file serves as the program to guide NBOProJmol, processing of frame production and sequence. Once the checkbox is checked, going to either one controls the other. Thread: Jmol-developers script command questions An interactive viewer for three-dimensional chemical structures. The video-script file (e.g., jobname.script) is a plain-ascii file of sequential command-lines that control the p roduction of sequential bitmap files for a final video. The two applets are jmolAppletA and jmolAppletB.

#JMOL SCRIPT COMMANDS HOW TO#

This page demonstrates how to synchronize applets in Jmol.